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'); Reports of Biochemistry and Molecular Biology rbmb.net Basic Sciences http://rbmb.net 1 admin 2322-3480 2322-3480 10.61882/rbmb en jalali 1399 7 1 gregorian 2020 10 1 9 3 online 1 fulltext
en Molecular Detection of Campylobacter Species: Comparision of 16SrRNA with slyD, cadF, rpoA, and dnaJ Sequencing میکروب شناسی Microbiology مقالات اصلی Original Article <div style="text-align: justify;"><strong><em>Background:</em></strong> <em>Campylobacter</em> spp. are the main cause of human gastroenteritis. The <em>16SrRNA</em> sequencing is one of fast molecualr method to detect this fastidious. In this study, we compared the sequencing of <em>16srRNA</em> genewith four housekeeping genestodetect <em>Campylobacter</em> spp. in patients with diarrhea and healthy people.<br> <strong><span dir="RTL"></span></strong><br> <strong><em>Methods:</em></strong> 60 samples of <em>Campylobacter</em> DNA extracted from stool samples of 30 patients with diarrhea and 30 healthy people were used. In order to detect <em>Campylobacter</em>, we designed primers for proliferation of <em>16SrRNA</em>, <em>cadF</em>, <em>dnaJ</em>, <em>slyD,</em> and <em>rpoA</em> genes using Primer 3, Mega 4.0 and Blast software. Then the PCR products were sequenced using ABI system.<br> <br> <strong><em>Results:</em></strong> The sequencing showed concordance of PCR-products with deposited sequences in the Gene Bank. Among diarrhea patients, 53.3% of samples were significantly (p< 0.05) positive for <em>slyD</em> and <em>cadF</em> genes and 50% of samples were positive using <em>16SrRNA</em>, <em>rpoA,</em> and <em>dnaJ</em> genes by PCR assay. The average of sensitivity and specificity were found 53.33% and 83.33%, respectively.<br> <br> <strong><em>Conclusions:</em></strong> Due to various copies of repeated sequences <em>of 16SrRNA</em> gene, analyzing its amplicons on electrophoresis may be more difficult than the <em>slyD</em> and <em>cadF</em> genes. According to our results, among the 5 studied genes; the highest detection rate was related to <em>slyD</em> and <em>cadF </em>genes. Although, <em>dnaJ </em>and <em>rpoA</em> genes, instead of <em>16SrRNA</em> gene, can be considered as appropriate genes for molecular detection of <em>Campylobacter</em> bacteria.</div> cadF, Campylobacter, Diarrhea, Molecular detection, slyD. 257 263 http://rbmb.net/browse.php?a_code=A-10-496-1&slc_lang=en&sid=1 Elahe Ghorbani marghmaleki 100319475328460017646 100319475328460017646 No Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran. Azam Ahmadi ahmadia22@yahoo.com 100319475328460017647 100319475328460017647 Yes Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran. Mohammad Arjomandzadegan 100319475328460017648 100319475328460017648 No Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran. Majid Akbari 100319475328460017649 100319475328460017649 No Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran. Aysan Karamghoshchi 100319475328460017650 100319475328460017650 No Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran.