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Reports of Biochemistry and Molecular Biology
rbmb.net
Basic Sciences
http://rbmb.net
1
admin
2322-3480
2322-3480
10.61882/rbmb
en
jalali
1399
7
1
gregorian
2020
10
1
9
3
online
1
fulltext
en
Molecular Detection of Campylobacter Species: Comparision of 16SrRNA with slyD, cadF, rpoA, and dnaJ Sequencing
میکروب شناسی
Microbiology
مقالات اصلی
Original Article
<div style="text-align: justify;"><strong><em>Background:</em></strong> <em>Campylobacter</em> spp. are the main cause of human gastroenteritis. The <em>16SrRNA</em> sequencing is one of fast molecualr method to detect this fastidious. In this study, we compared the sequencing of <em>16srRNA</em> genewith four housekeeping genestodetect <em>Campylobacter</em> spp. in patients with diarrhea and healthy people.<br>
<strong><span dir="RTL"></span></strong><br>
<strong><em>Methods:</em></strong> 60 samples of <em>Campylobacter</em> DNA extracted from stool samples of 30 patients with diarrhea and 30 healthy people were used. In order to detect <em>Campylobacter</em>, we designed primers for proliferation of <em>16SrRNA</em>, <em>cadF</em>, <em>dnaJ</em>, <em>slyD,</em> and <em>rpoA</em> genes using Primer 3, Mega 4.0 and Blast software. Then the PCR products were sequenced using ABI system.<br>
<br>
<strong><em>Results:</em></strong> The sequencing showed concordance of PCR-products with deposited sequences in the Gene Bank. Among diarrhea patients, 53.3% of samples were significantly (p< 0.05) positive for <em>slyD</em> and <em>cadF</em> genes and 50% of samples were positive using <em>16SrRNA</em>, <em>rpoA,</em> and <em>dnaJ</em> genes by PCR assay. The average of sensitivity and specificity were found 53.33% and 83.33%, respectively.<br>
<br>
<strong><em>Conclusions:</em></strong> Due to various copies of repeated sequences <em>of 16SrRNA</em> gene, analyzing its amplicons on electrophoresis may be more difficult than the <em>slyD</em> and <em>cadF</em> genes. According to our results, among the 5 studied genes; the highest detection rate was related to <em>slyD</em> and <em>cadF </em>genes. Although, <em>dnaJ </em>and <em>rpoA</em> genes, instead of <em>16SrRNA</em> gene, can be considered as appropriate genes for molecular detection of <em>Campylobacter</em> bacteria.</div>
cadF, Campylobacter, Diarrhea, Molecular detection, slyD.
257
263
http://rbmb.net/browse.php?a_code=A-10-496-1&slc_lang=en&sid=1
Elahe
Ghorbani marghmaleki
100319475328460017646
100319475328460017646
No
Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran.
Azam
Ahmadi
ahmadia22@yahoo.com
100319475328460017647
100319475328460017647
Yes
Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran.
Mohammad
Arjomandzadegan
100319475328460017648
100319475328460017648
No
Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran.
Majid
Akbari
100319475328460017649
100319475328460017649
No
Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran.
Aysan
Karamghoshchi
100319475328460017650
100319475328460017650
No
Infectious Diseases Research Center (IDRC), Arak University of Medical Sciences, Arak, Iran.