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Reports of Biochemistry and Molecular Biology
rbmb.net
Basic Sciences
http://rbmb.net
1
admin
2322-3480
2322-3480
10.61882/rbmb
en
jalali
1400
5
1
gregorian
2021
8
1
10
2
online
1
fulltext
en
Prediction of Blood miRNA-mRNA Regulatory Network in Gastric Cancer
زیست شناسی ملکولی
Molecular Biology
مقالات اصلی
Original Article
<div style="text-align: justify;"><strong><em>Background:</em></strong> The aim of the study was to suggest a high specific and sensitive blood biomarker for early GC diagnosis.<br>
<strong><em>Methods:</em></strong> the expression data of miRNAs and mRNAs were collected from the blood samples of the GC patients based on literature mining. Bioinformatics tools and databases (PANTHER, TargetScan, miRTarBase, miRDB, STRING, and Cytoscape) were used to predict the regulatory relationship. Subsequently, expression level of the selected miRNA was evaluated in the blood samples of gastritis patients to recognize the common miRNA between the GC and gastritis patients.<br>
<br>
<strong><em>Results:</em></strong> Analysis of 40 target genes by MCODE (installed in Cytoscape software) indicated 4 hub genes (WWP1, SKP2, KLHL42, and FBXO11) as a significant cluster in the PPI network related to miR-21, with Node Score Cutoff: 0.2, Degree Cutoff: 2 and K-Core: 2. In addition, the miRNA RT-qPCR results showed that, the expression level of miR-21 was significantly higher in gastritis group compared to the healthy group (p< 0.05).<br>
<br>
<strong><em>Conclusions:</em></strong> the present study clearly demonstrated the increasing level of blood miR-21 among the gastritis patients infected by <em>H. pylori</em>. Therefore, the altered miRNAs, especially overexpression of onco-miRs, may identify a potential link between miRNAs and pathogenesis of the <em>H. pylori</em>–related complications.</div>
Blood Profiling, Gastric Cancer, H. pylori, Mir-21, Regulatory Network.
243
256
http://rbmb.net/browse.php?a_code=A-10-623-1&slc_lang=en&sid=1
Mona
Noohi
100319475328460012642
100319475328460012642
No
Department of Microbiology, Karaj Branch, Islamic Azad University, Karaj, Iran.
Mojdeh
Hakemi-vala
mojdeh_hakemi@yahoo.com.
100319475328460012643
100319475328460012643
Yes
Department of Microbiology, Medical School, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Jamileh
Nowroozi
100319475328460012644
100319475328460012644
No
Department of microbiology, North Tehran Branch, Islamic Azad University, Tehran, Iran.
Seyed-Reza
Fatemi
100319475328460012645
100319475328460012645
No
Department of Gasterology and Hepatology, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Mehrouz
Dezfulian
100319475328460012646
100319475328460012646
No
Department of Microbiology, Karaj Branch, Islamic Azad University, Karaj, Iran.